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1. Castrignanò T, D'Antonio M, D'Onorio De Meo P, Sanna N, Rizzi R, Mignone F, Bonizzoni P, Pesole G HPC for Aspic: a distributed web resource for alternative splicing prediction and transcript isoform characterization Meeting: BITS 2007 - Year: 2007 Full text in a new tab Topic: Structural and functional analysis of genomes Abstract: Missing |
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2. Castrignanò T, D’Antonio M, D’Onorio De Meo P, Anselmo A, D'Erchia AM, Licciulli F, Mangiulli M, Mignone F, Pavesi G, Picardi E, Rizzi R, Bonizzoni P, Pesole G Automated data retrieval of alternative splicing sites and transcript isoformes in eukaryotic organisms Meeting: BITS 2009 - Year: 2009 Full text in a new tab Topic: Databases, Ontologies, Tools and Applications Abstract: Missing |
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3. Castrignanò T, Talamo IG, Grillo G, Licciulli F, Gisel A, Liuni S, Mignone F, Pesole G CSTgrid: a high performance environment for searching "Conserved Sequence Tags" Meeting: BITS 2005 - Year: 2005 Full text in a new tab Topic: Unspecified Abstract: The explosive growth of the biological data, stimulated by genome projects, has generated a parallel development of efficient computational approaches suitable for several biological research projects. In this area the need of high performance computing is growing, though usually not affordable by computational resources of a single research laboratory. Grid computing addresses this problem by coordinating and unificating several computational resources. To face the problem of searching "Conserved Sequence Tags" (CSTs) between an input DNA sequence, and several whole model genomes a grid framework can provide high performance, high availability and can fairly handle hundreds of concurrent request. Because the size of several whole genomes now exceed the memory capacity of a single machine, it is necessary to spread the search across multiple distributed working hosts to achieve high performance. This also improves the high availability, since the redundancy of the services increases the tolerance to both machine and network failures. This system also guarantees that the same services can be completed by many machines, reaching the ability to perform more requests that a single machine can handle. |
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4. Guffanti A, Iacono M, Pelucchi P, Kim N, Soldà G, Croft LJ, Taft RJ, Rizzi E, Askarian-Amiri M, Bonnal RJP, Callari M, Mignone F, Pesole G, Bertalot G, Bernardi LR, Albertini A, Lee C, Mattick JS, Zucchi I, De Bellis G A transcriptional sketch of a human breast cancer by 454 deep sequencing Meeting: BITS 2009 - Year: 2009 Full text in a new tab Topic: Transcriptomics Gene Expression and Microarray Analysis Abstract: Missing |
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5. Iacono M, Mignone F, Anselmo A, Pesole G ESTissue: A novel method to identify gene expression profile EST based Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Gene expression Abstract: Missing |
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6. Iacono M, Mignone F, Pesole G Genome-wide analysis of the sequence region sorrounding the transcription start site of human mRNAs Meeting: BIOCOMP 2003 - Year: 2003 Full text in a new tab Topic: Comparative genomics and molecular evolution Abstract: Missing |
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7. Licciulli F, Caratozzolo MF, Cornacchia S, D'Elia D, D'Erchia AM, Fosso B, Grillo G, Liuni S, Mangiulli M, Manzari C, Mignone F, Paluscio AM, Picardi E, Sbisà E, Tullo A, Pesole G A bioinformatics workflow for the analysis of transcriptome data generated by deep-sequencing Meeting: Proceedings of BITS 2010 Meeting - Year: 2010 Full text in a new tab Topic: Transcriptomics Abstract: Missing |
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8. Mignone F, Pesole G Regioni rRNA-like e upstream ORFs in sequenze UTR ? Meeting: BIOCOMP 2002 - Year: 2002 Full text in a new tab Topic: Abstract: Missing |
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9. Mignone F, Re M, Horner DS, Pesole G A new strategy to identify novel genes and gene isoforms: whole genome comparison of human and mouse Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Recognition of genes and regulatory elements Abstract: Missing |
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10. Pesole G, Mangiulli M, Picardi E, D'Erchia AM, Castrignanò T, Rizzi R, Anselmo A, Bonizzoni P, Mignone F ASPIC: a novel bioinformatics tool to investigate the impact of alternative splicing in the expansion of human transcriptome and proteome Meeting: BITS 2007 - Year: 2007 Full text in a new tab Topic: Novel methodologies, algorithms and tools Abstract: Missing |